. FEBS Lett 333:169-174, 1993
2) Nakatogawa H, Suzuki K, Kamada Y, et al:Dynamics and diversity in autophagy mechanisms:lessons from yeast. Nat Rev Mol Cell Biol 10:458-467, 2009
3) Chan EY, Tooze SA:Evolution of Atg1 function and regulation. Autophagy 5:758-765 2009
4) Hara T, Takamura A, Kishi C, et al:FIP200, a ULK-interacting protein, is required for autophagosome formation in mammalian cells. J Cell Biol 181:497-510, 2008
5) Chan EY, Longatti A, McKnight NC, et al:Kinase-inactivated ULK proteins inhibit autophagy via their conserved C-terminal domains using an Atg13-independent mechanism. Mol Cell Biol 29:157-171, 2009
6) Hosokawa N, Hara T, Kaizuka T, et al:Nutrient-dependent mTORC1 association with the ULK1-Atg13-FIP200 complex required for autophagy. Mol Biol Cell 20:1981-1991, 2009
7) Jung CH, Jun CB, Ro SH, et al:ULK-Atg13-FIP200 complexes mediate mTOR signaling to the autophagy machinery. Mol Biol Cell 20:1992-2003, 2009
8) Ganley IG, Lam du H, Wang J, et al:ULK1. ATG13. FIP200 complex mediates mTOR signaling and is essential for autophagy. J Biol Chem 284:12297-12305, 2009
9) Hosokawa N, Sasaki T, Iemura SI, et al:Atg101, a novel mammalian autophagy protein interacting with Atg13. Autophagy 5:in print, 2009
10) Mercer CA, Kaliappan A, Dennis PB:A novel, human Atg13 binding protein, Atg101, interacts with ULK1 and is essential for macroautophagy. Autophagy 5:649-662, 2009
11) Itakura E, Kishi C, Inoue K, et al:Beclin 1 forms two distinct phosphatidylinositol 3-kinase complexes with mammalian Atg14 and UVRAG. Mol Biol Cell 19:5360-5372, 2008
12) Sun Q, Fan W, Chen K, et al:Identification of Barkor as a mammalian autophagy-specific factor for Beclin 1 and class III phosphatidylinositol 3-kinase. Proc Natl Acad Sci USA 105:19211-19216, 2008
13) Matsunaga K, Saitoh T, Tabata K, et al:Two Beclin 1-binding proteins, Atg14L and Rubicon, reciprocally regulate autophagy at different stages. Nat Cell Biol 11:385-396, 2009
14) Zhong Y, Wang QJ, Li X, et al:Distinct regulation of autophagic activity by Atg14L and Rubicon associated with Beclin 1-phosphatidylinositol-3-kinase complex. Nat Cell Biol 11:468-476, 2009
15) Fimia GM, Stoykova A, Romagnoli A, et al:Ambra1 regulates autophagy and development of the nervous system. Nature 447:1121-1125, 2007
16) Takahashi Y, Coppola D, Matsushita N, et al:Bif-1 interacts with Beclin 1 through UVRAG and regulates autophagy and tumorigenesis. Nat Cell Biol 9:1142-1151, 2007
. Genes Cells 13:537-547, 2008
18) Proikas-Cezanne T, Waddell S, Gaugel A, et al:WIPI-1α(WIPI49), a member of the novel 7-bladed WIPI protein family, is aberrantly expressed in human cancer and is linked to starvation-induced autophagy. Oncogene 23:9314-9325, 2004
19) Axe EL, Walker SA, Manifava M, et al:Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum. J Cell Biol 182:685-701, 2008
20) Young AR, Chan EY, Hu XW, et al:Starvation and ULK1-dependent cycling of mammalian Atg9 between the TGN and endosomes. J Cell Sci 119:3888-3900, 2006
21) Ropolo A, Grasso D, Pardo R, et al:The pancreatitis-induced vacuole membrane protein 1 triggers autophagy in mammalian cells. J Biol Chem 282:37124-37133, 2007
22) Nowak J, Archange C, Tardivel-Lacombe J, et al:The TP53INP2 protein is required for autophagy in mammalian cells. Mol Biol Cell 20:870-881, 2009
23) Fujita N, Hayashi-Nishino M, Fukumoto H, et al:An Atg4B mutant hampers the lipidation of LC3 paralogues and causes defects in autophagosome closure. Mol Biol Cell 19:4651-4659, 2008
24) Sou YS, Waguri S, Iwata J, et al:The Atg8 conjugation system is indispensable for proper development of autophagic isolation membranes in mice. Mol Biol Cell 19:4762-4775, 2008
25) Nakatogawa H, Ichimura Y, Ohsumi Y:Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion. Cell 130:165-178, 2007
26) Mizushima N, Yamamoto A, Hatano M, et al:Dissection of autophagosome formation using Apg5-deficient mouse embryonic stem cells. J Cell Biol 152:657-667, 2001
27) Fujita N, Itoh T, Omori H, et al:The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy. Mol Biol Cell 19:2092-2100, 2008
28) Munafó DB, Colombo MI:Induction of autophagy causes dramatic changes in the subcellular distribution of GFP-Rab24. Traffic 3:472-482, 2002
29) Hirota Y, Tanaka Y:A small GTPase, human Rab32, is required for the formation of autophagic vacuoles under basal conditions. Cell Mol Life Sci[Epub ahead of print],2009
30) Gutierrez MG, Munafó DB, Berón W, et al:Rab7 is required for the normal progression of the autophagic pathway in mammalian cells. J Cell Sci 117:2687-2697, 2004
31) Jäger S, Bucci C, Tanida I, et al:Role for Rab7 in maturation of late autophagic vacuoles. J Cell Sci 117:4837-4848, 2004
32) Itoh T, Fujita N, Kanno E, et al:Golgi-resident small GTPase Rab33B interacts with Atg16L and modulates autophagosome formation. Mol Biol Cell 19:2916-2925, 2008
33) Yamamoto A, Masaki R, Tashiro Y:Characterization of the isolation membranes and the limiting membranes of autophagosomes in rat hepatocytes by lectin cytochemistry. J Histochem Cytochem 38:573-580, 1990