1)Brant SR, Shugart YY. Inflammatory bowel disease gene hunting by linkage analysis:rationale, methodology, and present status of the field. Inflamm Bowel Dis 10:300-311, 2004
2)Yamazaki K, McGovern D, Ragoussis J, et al. Single nucleotide polymorphisms in TNFSF15 confer susceptibility to Crohn's disease. Hum Mol Genet 14:3499-3506, 2005
3)Duerr RH, Taylor KD, Brant SR, et al. A genome-wide association study identifies IL23R as an inflammatory bowel disease gene. Science 314:1461-1463, 2006
4)Jostins L, Ripke S, Weersma RK, et al. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature 491:119-124, 2012
5)Liu JZ, van Sommeren S, Huang H, et al. Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations. Nat Genet 47:979-986, 2015
6)Liu Z, Liu R, Gao H, et al. Genetic architecture of the inflammatory bowel diseases across East Asian and European ancestries. Nat Genet 55:796-806, 2023
7)de Lange KM, Moutsianas L, Lee JC, et al. Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease. Nat Genet 49:256-261, 2017
8)McGovern DP, Kugathasan S, Cho JH. Genetics of inflammatory bowel diseases. Gastroenterology 149:1163-1176, e2, 2015
9)Hugot JP, Chamaillard M, Zouali H, et al. Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease. Nature 411:599-603, 2001
10)Ogura Y, Bonen DK, Inohara N, et al. A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease. Nature 411:603-606, 2001
11)Sivanesan D, Beauchamp C, Quinou C, et al. IL23R(interleukin 23 receptor)variants protective against inflammatory bowel diseases(IBD)display loss of function due to impaired protein stability and intracellular trafficking. J Biol Chem 291:8673-8685, 2016
12)Peters LA, Perrigoue J, Mortha A, et al. A functional genomics predictive network model identifies regulators of inflammatory bowel disease. Nat Genet 49:1437-1449, 2017
13)Terao C, Suzuki A, Momozawa Y, et al. Chromosomal alterations among age-related haematopoietic clones in Japan. Nature 584:130-135, 2020
14)Kakuta Y, Iwaki H, Umeno J, et al. Crohn's disease and early exposure to thiopurines are independent risk factors for mosaic chromosomal alterations in patients with inflammatory bowel diseases. J Crohns Colitis 16:643-655, 2022
15)Fukata N, Okazaki K, Omiya M, et al. Hematologic malignancies in the Japanese patients with inflammatory bowel disease. J Gastroenterol 49:1299-1306, 2014
16)Jung YS, Han M, Park S, et al. Cancer risk in the early stages of inflammatory bowel disease in Korean patients:a nationwide population-based study. J Crohns Colitis 11:954-962, 2017
17)Wang LH, Yang YJ, Cheng WC, et al. Higher risk for hematological malignancies in inflammatory bowel disease:a nationwide population-based study in Taiwan. Am J Gastroenterol 111:1313-1319, 2016
18)Inoue N, Tamura K, Kinouchi Y, et al. Lack of common NOD2 variants in Japanese patients with Crohn's disease. Gastroenterology 123:86-91, 2002
19)Yamazaki K, Takazoe M, Tanaka T, et al. Absence of mutation in the NOD2/CARD15 gene among 483 Japanese patients with Crohn's disease. J Hum Genet 47:469-472, 2002
20)Sugimura M, Kinouchi Y, Takahashi S, et al. CARD15/NOD2 mutational analysis in Japanese patients with Crohn's disease. Clin Genet 63:160-162, 2003
21)Kakuta Y, Kawai Y, Naito T, et al. A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals. J Crohns Colitis 13:648-658, 2019
22)Okamoto D, Kawai Y, Kakuta Y, et al. Genetic analysis of ulcerative colitis in Japanese individuals using population-specific SNP array. Inflamm Bowel Dis 26:1177-1187, 2020
23)Jung S, Ye BD, Lee HS, et al. Identification of three novel susceptibility loci for inflammatory bowel disease in Koreans in an extended genome-wide association study. J Crohns Colitis 15:1898-1907, 2021
24)Yang SK, Hong M, Zhao W, et al. Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations. Gut 63:80-87, 2014
25)Yang SK, Hong M, Choi H, et al. Immunochip analysis identification of 6 additional susceptibility loci for Crohn's disease in Koreans. Inflamm Bowel Dis 21:1-7, 2015
26)Gettler K, Levantovsky R, Moscati A, et al. Common and rare variant prediction and penetrance of IBD in a large, multi-ethnic, health system-based biobank cohort. Gastroenterology 160:1546-1557, 2021
27)Rivas MA, Beaudoin M, Gardet A, et al. Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease. Nat Genet 43:1066-1073, 2011
28)Beaudoin M, Goyette P, Boucher G, et al. Deep resequencing of GWAS loci identifies rare variants in CARD9, IL23R and RNF186 that are associated with ulcerative colitis. PLoS Genet 9:e1003723, 2013
29)Li D, Achkar JP, Haritunians T, et al. A pleiotropic missense variant in SLC39A8 is associated with Crohn's disease and human gut microbiome composition. Gastroenterology 151:724-732, 2016
30)Nakata T, Creasey EA, Kadoki M, et al. A missense variant in SLC39A8 confers risk for Crohn's disease by disrupting manganese homeostasis and intestinal barrier integrity. Proc Natl Acad Sci USA 117:28930-28938, 2020
31)Sazonovs A, Stevens CR, Venkataraman GR, et al. Large-scale sequencing identifies multiple genes and rare variants associated with Crohn's disease susceptibility. Nat Genet 54:1275-1283, 2022
32)Nambu R, Warner N, Mulder DJ, et al. A systematic review of monogenic inflammatory bowel disease. Clin Gastroenterol Hepatol 20:e653-e663, 2022
33)Uhlig HH, Booth C, Cho J, et al. Precision medicine in monogenic inflammatory bowel disease:proposed mIBD REPORT standards. Nat Rev Gastroenterol Hepatol 20:810-828, 2023
34)Kammermeier J, Lamb CA, Jones KDJ, et al. Genomic diagnosis and care co-ordination for monogenic inflammatory bowel disease in children and adults:consensus guideline on behalf of the British Society of Gastroenterology and British Society of Paediatric Gastroenterology, Hepatology and Nutrition. Lancet Gastroenterol Hepatol 8:271-286, 2023